PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 299aa    MW: 32821.3 Da    PI: 7.021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.5e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
   XP_016480330.1  5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfatvlRSRSNVDLKDKWRNL 56
                     79************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.05163IPR017930Myb domain
SuperFamilySSF466894.71E-16258IPR009057Homeodomain-like
SMARTSM007172.4E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-14556IPR009057Homeodomain-like
PfamPF002492.7E-8556IPR001005SANT/Myb domain
CDDcd116605.09E-21656No hitNo description
SMARTSM005269.1E-11123188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.18E-14125198IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.113125193IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.7E-14128194IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.5E-9130186IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFATV LRSRSNVDLK DKWRNLHVMA  60
NGLGSRHQVS RHQGRVVSKS VQPKQKHDDN SLLVSTAVEN DTEVLDPKPL ASSGDALEDV  120
GCEKTICRLD DLILEAIAKL KEPHGSRRNA ILSYIEEWYT APPNFERLLA ANLKALTDKG  180
RLIKVRHQYR IAPSRLSSGT KGGHLSFLMD GKEDSTMIEK NEIRIRTKAQ IDVELEQMKS  240
MTAEEAAAAA AQAVADAEAA IAEAERAARI AEAAEAEAEA AQCFHEVTLK ALQHQTIPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144556e-75BT014455.1 Lycopersicon esculentum clone 133802R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587559.10.0PREDICTED: single myb histone 5-like isoform X2
RefseqXP_009587560.10.0PREDICTED: single myb histone 5-like isoform X2
RefseqXP_009587561.10.0PREDICTED: single myb histone 5-like isoform X2
RefseqXP_009587562.10.0PREDICTED: single myb histone 5-like isoform X2
RefseqXP_016480326.10.0PREDICTED: single myb histone 5-like isoform X1
RefseqXP_016480327.10.0PREDICTED: single myb histone 5-like isoform X1
RefseqXP_016480328.10.0PREDICTED: single myb histone 5-like isoform X1
RefseqXP_016480329.10.0PREDICTED: single myb histone 5-like isoform X1
RefseqXP_016480330.10.0PREDICTED: single myb histone 5-like isoform X1
TrEMBLA0A0V0IBG01e-130A0A0V0IBG0_SOLCH; Putative telomere repeat-binding factor 1-like
STRINGSolyc02g064630.2.11e-122(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-66telomere repeat binding factor 1